PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16006_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 225aa    MW: 24923.1 Da    PI: 5.2681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16006_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000114264123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         y+C+ C + F++   L  H+++H
  cra_locus_16006_iso_1_len_776_ver_3 42 YTCTFCRREFRSAQALGGHMNVH 64
                                         9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.31E-63969No hitNo description
SMARTSM003550.00664264IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-54265IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1574269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
XSLSSNSTTS WMWNPNQEED DSWEIRAFEQ DSGNITWPPR SYTCTFCRRE FRSAQALGGH  60
MNVHRRDRAR LHQPSIHTGN PKANANTNAS SSVVATTNST LIIPAQEFVR NGGLCLLYSL  120
HSPNNGILNP NKVNSCMDSP STLLSISPFE GNNLVCPNYP PTTYTSTYPI TPQSVNSISI  180
CQSSNNTEPS ASNSNDNNNP DTGEIKKDLE IEEELDLELR LGRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2l1o_A2e-133764229Transcriptional regulator SUPERMAN
1njq_A2e-133764229superman protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278326.13e-68PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A068UXM03e-80A0A068UXM0_COFCA; Uncharacterized protein
STRINGPOPTR_0003s09000.13e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133